1.
A Study On Prevalance Of Hcv Genotypes And Risk Factors Of Hepatitis C Virus In Punjab
by Tahira Tarar | Miss Faiza Masood | Dr. Muhammad | Mr. Zahid Mushtaq.
Material type: ; Format:
print
Publisher: 2011Dissertation note: Hepatitis C virus (HCV) was marked as major agent which causes non-A, non-B hepatitis. Various partial and complete sequences of HCV nucleotide had been identified in the world. When these sequences were compared a marked genetic heterogeneity was revealed, that suggested the existence of HCV genotypes. Recent studies have pointed out the association of different HCV genotypes with different profiles of pathogenecity, infectivity and response to antiviral therapy. In our study we used typing system based on genotype specific primers focused on HCV 5´-UTR by using PCR. Genotype specific primers were designed for genotype 1, 2a, 2b, 3a, 3b and 4. 100 samples of HCV positive patients were collected. The frequency of occurrence of genotype 2a was 4 %, 2b was 5 %, 3a was 71 %, 3b was 11% and untypeable was 9 %. Blood transfusions, therapeutic injections, reuse of needles, dental procedures, shaving practices, body piercings, jaundice, dialysis, surgery and other multiple risk factors associated with HCV were studied. Major risk factor among females was therapeutic injections and among males the major risk factor was absence of shaving precautions. The study concludes that the most prevalent genotype in Punjab province is 3a. As each genotype sequence is different, the antiviral therapy against that particular genotype is also different. The treatment would only be successful if the genotype of HCV infected patient is known. This study will help in correlating efficacy of interferon therapy with different HCV genotypes and to understand the mode of transmission for hepatitis C virus.
Availability: Items available for loan: UVAS Library [Call number: 1336,T] (1).
2.
Single Nucleotide Polymorphisms In Pouifi Gene And Its Association With Milk Production Traits In Pakistani Cattle
by Sadia Munir | Dr. Asif Nadeem | Dr. Abu Saeed | Dr. Muhammad Wasim.
Material type: ; Format:
print
; Literary form:
not fiction
Publisher: 2011Dissertation note: In farm animals, the primary focus of selection has been to improve milk yield. Milk field is a polygenic trait and a few potential candidate genes have been recognized.
Association studies have shown that POUlFl is related to many production traits in
domestic animals and is one of those candidate genes that are involved in milk
production. POUl F 1 encodes a pituitary-specific transcription factor. It is well
established that growth hormone (GH) released from pituitary gland plays an essential
role in growth, mammary gland development and lactation process. The bovine
POUlFl gene is of 15952 bp length having 6 exons. The genetic characterization of
the POUlFl gene to identify the SNPs as genetic markers and validation of these
potential markers by associating them with milk production traits has been performed.
A total 35 samples from Sahiwal and 30 from Holstein-Friesian cattle breeds were
sequenced for all 6 exonic portions of the POUlFl by using 6 sets of primers. A total
15 polymorphic sites in Sahiwal and 14 in Holstein-Friesian were identified from
these sequences. Out of total 15 SNPs identified in Sahiwal, 12 were in intronic
region and 3 were in exonic. Out of 14 SNPs identified in Holstein-Friesian, 10 were
in intronic and 4 were in exonic region. The sequences of the amplified POUl F 1 gene
fragments were aligned with the help of BLAST for SNPs identification. This study is
first step in finding some confirmed markers for milk yield in Sahiwal and Holstein-
Friesian cattle breed that can be used in future for selection and breeding programmes.
Availability: Items available for loan: UVAS Library [Call number: 1373,T] (1).
3.
Srudy Of Gamma-Aminobutyric Acid A Receptor Delta Subnuit Gene Mutations Involved In Generalized Epilepsy With Febrile Seizures Plus (GEFS+) Patients in Punjab
by Iram Javed | Dr. Muhammad Wasim | Dr. Abu Saeed Hashmi | Dr. Asif Nadeem.
Material type: ; Format:
print
Publisher: 2012Dissertation note: World health organization (WHO) reports that neurological disorders affect one billion people worldwide, including 50 million affected by epilepsy. Epilepsy is a common neurological disorder characterized by recurrent, periodic, spontaneous and unprovoked seizures. Generalized epilepsy with febrile seizure plus (GEFS+) is an autosomal dominant disorder and a heterogeneous familial condition in which family members express febrile seizures initially, and then show multiple phenotypes of myoclonic epilepsy including partial or absence seizures and generalized tonic conic seizures. Molecular genetics techniques have identified various GEFS+ associated mutations in many genes i.e. sodium channel genes (SCN2A, SCN1A, and SCN1B) and some GABA receptor genes (GABRG2 and GABRD). GABAA receptors are the principal intermediaries of fast inhibitory neurotransmission in the eNS and have been frequently reported to playa significant role in a number of seizures. GABRD gene encodes the delta (8) subunit and is usually located in extrasynaptic GABAA receptors. The present study was aimed to investigate coding regions of GABRD gene for analyzing the mutations involved in epilepsy. Blood samples of unrelated true representative ofGEFS+ were collected from psychiatry departments of different hospitals of Lahore. DNA were extracted with the standard protocol and amplifications of the GABRD regions were done with specially designed primers. Later on, sequencing of target fragments was carried out. Sequences were analyzed through BioEdit software and then aligned with the help of custalW2 software. Out of 14 GEFS+ patients, only 3 were identified with a novel heterozygous transition mutation in intron 5. Further study, with much larger sample number, is required to revise the effects of this polymorphism and accurately identifying the associated factors. There is a need to explore the other gene mutations causing epilepsy in local population of Punjab and Pakistan that will ultimately help to develop genetic counseling strategies, gene therapies and prenatal diagnostic procedures for the population of Pakistan.
Availability: Items available for loan: UVAS Library [Call number: 1394,T] (1).
4.
Molecular Approach For Sex Determination In Avian Species
by Sehrish Basheer | Dr. Asif Nadeem | Dr. Muhammad Wasim | Madam.
Material type: ; Format:
print
; Literary form:
drama
Publisher: 2011Dissertation note: To tell the difference between male and female birds takes keen observation. While not all bird species have easily visible gender differences. Almost all birds' species are sexually monomorphic so it is difficult to distinguish between male and female characters. There are some techniques for bird's sex identification. Surgical Sexing, in this an endoscope is passed into the body cavity and ovaries or testis can be observed. It is available for all types of birds. Surgical sexing is oldest and quickest method. But it cause stress to the bird and expensive technique. Fecal steroid analysis is another technique in which stool sample is analyzed for reproductive hormone presence. In this technique bird should be sexually mature for analysis. Bload Sexing is used to determine the male or female bird. This can be done at any age. Feather exing is very useful and economical method. Retrieve a feather pulp from growing feather and analyze the presence of male and female chromosome. Two chromosomes Z and Ware present in birds. ZZ in male and ZW in female. The method used in this study was based on the chromosome differences. Nine different species of birds which includes green parrot, budgerigar, .pigeon, quail, sparrow, chicken, peacock, duck and pheasants were analyzed and their sex is determined by molecular methods. DNA will be extracted from feathers and blood. The intronic egion of CHD 1- Wand CHD l-Z gene will be amplified by sex specific primer. PCR products were screened by agarose gel electrophoresis. The PCR products were show double and single bands on the agarose gel. The double bands indicate female bird because of ZW chromosome is present in females and single band indicates the male bird because of ZZ chromosomes in males.
Availability: Items available for loan: UVAS Library [Call number: 1400,T] (1).
5.
Effect Of Date Palm Pollen On The Plasma And Intra-Testicular Testosterone Levels Of Male Albino Rats
by Yasir Arfat | Dr. Muhammad Tayyab | Dr. Abu Saeed Hashmi | Dr. Ali Raza.
Material type: ; Format:
print
Publisher: 2012Dissertation note: Considerable evidence exists for the efficacy and safety of short courses of low
dose testosterone therapy for treating infertility and delayed puberty. This treatment is
associated with high levels of patient satisfaction. There is not yet sufficient evidence for
the routine use of other therapies. Experimentally, date extract had been shown to
increase sperm count and increase stimulating concentration of testosterone count in
guinea pigs and to enhance spermatogenesis, follicle stimulating hormone (FSH) and
luteinizing hormone (LH) in rats. Intratesticular testosterone (ITT) is thought to play a
key role in the control of spermatogenesis but is rarely measured.
The present study is therefore designed to examine the effect of date palm pollen
(DPP) (Phoenix dactylifera) on the plasma and intra-testicular testosterone levels using
male albino rat as an experimental animal with the hope that the result of this study may
pave the way for treating male infertility and delayed puberty.
Adult male albino rats were divided into two groups (control and experimental).
Experimental group were given date palm pollen (DPP) suspension in a single oral dose
of 120 mg/kg of body weight for 35 days. Where as the control were given equal amount
of distilled water. Blood samples of control and experimental groups were taken for
measurement of serum testosterone levels at day 0, 12, 24 and finally at day 36.Aanimals
were sacrificed. Testes were removed for gross and biological studies. Intra-testicular
testosterone levels were measured at the end of experimental studies.
There were no statistically significant differences in the variable of control group.
Experimental group who received DPP suspension for 35 days showed statistically significant increase in body weight, weight of paired testes, serum and intra- testicular testosterone levels as compared to control group.
Availability: Items available for loan: UVAS Library [Call number: 1411,T] (1).
6.
Molecular Characterization Of Cacna 1H Gene To Fine Out Association Of Polymorhism In Childhood Absence
by Qurrat-ul-Ain | Dr. Muhammad Wasim | Dr. Muhammad Asif | Mrs. Shagufta.
Material type: ; Format:
print
; Literary form:
not fiction
Publisher: 2012Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 1472,T] (1).
7.
Genetic Variability Of Sahiwal And Cholistani Cattle Breeds Of Pakistan Usin Mitochondrial D-Loop Sequences
by Sania Saeed | Mr. Tanveer Hussain | Dr. Abu Saeed | Dr. Muhammad Wasim.
Material type: ; Format:
print
; Literary form:
drama
Publisher: 2011Dissertation note: Pakistan is rich in cattle genetic resources. The phenotypic and genetic diversity of animal breeds in Pakistan is very vast. Efforts to manage and utilize these genetic resources efficiently are lacking due to lack of both awareness and weakness of Government institutions. The genetic data of dairy cattle breeds (Sahiwal and Cholistani) is not yet been studied for their genetic identification, conservation and to find the genetic diversity among them and it needs to be established. For this study the blood samples( 25 samples from each breed) were collected from their home tracts and livestock farms. Unrelated animals with typical phenotypic features known for Sahiwal and Cholistani cattle breeds were selected from their breeding areas and Government livestock farms. Blood samples from true representative individuals of Sahiwal breed were collected from Research Centre for the Conservation of Sahiwal Cattle (RCCSC), Jahangirabad, Khanewal, Semen Production Unit (SPU) Qadirabad and Barani Livestock Production & Research Institute (BLPRI), Kherimurat District Attock. Cholistani cattle samples were collected from Govt. Livestock Farm, Jugaitpeer, Bahawalpur. Sampling from siblings was avoided to minimize inbreed samples as it results in depleting of gene pool along with causing inbreeding depression.DNA was extracted and quantified with the standard protocol in Molecular Biology and Genomics Laboratory of Institute of Biochemistry and Biotechnology, University of Veterinary and Animal Sciences, Lahore. Specific primers were designed by using special software i.e. Primer Fox for mitochondrial D-loop region from NCBI accession no. NC_006853.1.Primers optimization was done after primer designing and afterwards, PCR amplification was performed. Then sequencing of target fragments was carried out using Prism ABI 3130L sequencer and Analyser.Sequences were alligned with the help of software blast2sequence and SNPs were detected. It was found that ratio of transition mutation was higher than transversions i.e. 41 transition and 10 transversions. Sequences were analyzed and compared with already reported sequence of Mitochondrial DNA of Bosindicuss, Bostaurus, Bubalusbubalis, Canis lupus familiaris, Caprahircus, Equuscaballusisolate, Ovisaries and Cameliusdromedaries sequencesavailable at NCBI. Single Nucleotide Polymorphisms (SNPs) were then detected. A phylogenetic tree constructed using MEGA 5.1 software revealed that Pakistani, European and Asian cattle are genetically same but different from Buffalo.This work is very helpful about breed characterization of two cattle breeds (Sahiwal and Cholistani) and developing understanding about genetic architecture of cattle breeds as present study conclude that 52 SNPs were present in Sahiwal and Cholistani breed of Pakistan.
Availability: Items available for loan: UVAS Library [Call number: 1498,T] (1).
8.
Mutation Screen Of "Gamma-Aminobutyric Acid (Gaba)-A Receptor, Gamma 2" In Punjab Population
by Muhammad Javed Iqbal | Dr. Muhammad Wasim | Dr. Abu Saeed | Dr. Ali Raza Awan.
Material type: ; Format:
print
; Literary form:
drama
Publisher: 2012Dissertation note: Epilepsy is a formidable form of neural disorder that can impose its long lasting effect on person's life and development. To date, it lacks any effective therapy and is multistep disease strengthened by an overwhelming number of genetic and epigenetic mechanisms that streamline epileptic attacks. This particular study encompasses two major types of epilepsy, CAE and GTCS by targeting a GABRG2 gene. Mutation analysis of the coding exons (exon 3, 5 and 9) was performed by direct sequencing of GABRG2 in order to sought out complex biological entities in both types of epilepsies. GABRG2 is a molecule that has recently been characterized as the culprit for epileptic seizures onset. GABRG2 encodes GABA receptor that is fundamental inhibitory neurotransmitter in mammalian brain and is a ligand-gated chloride channels. This ligand-receptor coupling results in the inward shuttling of chloride ions through the channels and this hyperpolarizes the neurons, which induce the inhibitory effect of neurotransmitters. Direct sequencing of candidate gene "GABRG2" traced out a single polymorphic site in the exon 3 of the CAE as well as GTCS cases. However, this single nucleotide alteration is more commonly identified in childhood absence epilepsy patients as compared to the generalized cases. Silent mutation was identified at locus 27909 C>T of 46.66% of the total screened or analyzed cases.
Availability: Items available for loan: UVAS Library [Call number: 1500,T] (1).
9.
Bioconversion Of Wheatbran To Glucose By Gluoamylase From Aspergillus Fumigatus
by Hassan Ali | Dr. Muhammad Tayyab | Dr. Abu Saeed Hashmi | Dr. Asif Nadeem.
Material type: ; Format:
print
; Literary form:
drama
Publisher: 2012Dissertation note: Background:
Glucose is produced by hydrolysis of starch. Many crops like maize, rice and wheat can be used as the source of starch. Wheat bran is an agricultural waste byproduct which can be converted to glucose using glucoamylase. Wheat bran is very cheap source for carbohydrates. It is mainly composed of carbohydrates; hemicelluloses, cellulose and starch. Glucoamylase is an enzyme that yields glucose from the nonreducing chain of amylose and amylopectin by hydrolyzing ? -1,3, ?-1, 4 and ?-1,6 linkages of starch. Glucoamylases are produced by plants, animals and microorganism. Microbes, including bacteria, yeast and fungi are major source for the production of glucoamylases. Aspergillus fumigatus is found in soil and in decaying organic matter and it has an essential role in carbon and nitrogen recycling.
Hypothesis: A. fumgiatus might be a good source for the production of glucoamylase through submerged fermentation conditions.
Parameters/Methodlogy: Aspergillus fumigatus was identified macro and microscopically. Enzyme production was measured by DNS method. The effects of different sources of carbon, phosphorous and nitrogen on glucoamylase production were also examined. In order to get the optimum production of glucoamylase, the effect of temperature, pH and incubation period was analysed separately.
Methodology: Initially the A. fumigatus was isolated and conditions were optimized for the growth and production of glucoamylase. Production of enzyme was examined by DNS method. The effects of various carbon, nitrogen and phosphorous sources were examined on the production of glucoamylase. From the present study it was concluded that maximum production of glucoamylase can be obtained from A. fumigatus using wheat bran as the substrate at pH of 4.8, temperature of 40oC with an incubation time of three days.The use of wheat bran as substrate wheat bran for the production of glucoamylase will reduce the cost for the production of glucoamylase.
Availability: Items available for loan: UVAS Library [Call number: 1509,T] (1).
10.
Dna Barcoding Of Pakistan Avian Families (Sturnidae & Columbidae)
by Emma Umar | Dr. Ali Raza Awan | Dr. Muhammad | Ms. Saeeda Kalsoom.
Material type: ; Format:
print
Publisher: 2012Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 1515,T] (1).
11.
Assessment Of Genetic Diversity In Balochi And Rakhshani Sheep Breeds Of Balochistan Using Microsatellite Dna
by Abdul Wajid | Dr. Muhammad Wasim | Dr. Abu Saeed | Mr. Tanveer Hussain.
Material type: ; Format:
print
Publisher: 2011Dissertation note: Pakistan being agriculture based country has a great potential in livestock sector, it plays an important role in the economy of the country. Pakistan is rich in Animal Genetics Resource (AnGR) and has various breeds of sheep but lacking genetic data of these breeds which need to established data for their genetic identification. Customarily, classification of breed was based on phenotypic traits. In some cases, recent genetic studies have found differences in the structure proposed. Molecular characterization is a prevailing tool to consider the genetic variation existed within and among breeds. Characterization and evaluation of genetic differences among these breeds is necessary for their effective and meaningful improvement and conservation. The advent of molecular techniques has led to an increase in the studies that focus on the genetic characterization of domestic breeds using genetic markers. Due to their reliability and availability, the microsatellites have become preferred method for the genome mapping. Microsatellites or STRs are the 2-6 nucleotide tandem repeats present in both coding and non coding regions of both prokaryotes and eukaryotes. Microsatellites are powerful tools in genome mapping, forensic DNA studies, paternity testing, population genetics and conservation/ management of biological resources.
The present study was conducted on the molecular diversity analysis of two sheep breeds Balochi and Rakhshani of Balochistan using 11 FAO recommended microsatellites markers. Blood samples of unrelated true representative animals of sheep breeds were selected from their breeding tracts and from different Government Livestock Farms in Balochistan province. DNA was extracted with the standard protocol and amplification of DNA done with selected markers in Molecular Biology and Genomics Laboratory in the Institute of Biochemistry and Biotechnology. PCR products were examined on non denaturing Polyacralamide Gel Electrophoresis (PAGE). Genotyping results vanalyzed through the software POPGENE VERSION 1.31 and "POWER STATE" for calculating the observed and expected number of alleles, expected and observed heterozygosity, homozygosity, F-statistics (FST, FIT, FIS), Polymorphic Information Content (PIC), matching probability power of discrimination and power of exclusion. This work provided the genetic data which is useful in breed identification and making effective breeding policies and conservational activities in future according to FAO global Farm Animal Genetic resource data.
Average observed heterozygosity, average observed homozygosity, observed number of allels (na) and expected number of alleles for all loci and population in this study were 0.6055, 0.3945, 6.3636 and 4.2805 respectively. Almost all of the microsatellite markers showed significant variations in both breeds of sheep.
This work provided the genetic data which will be helpful in breed identification and making effective breeding policies and conservational activities in future according to FAO global Farm Animal Genetic resource data. Moreover this study can become the basis for further research investigations in sheep breeds in Balochistan and Pakistan.
Availability: Items available for loan: UVAS Library [Call number: 1516,T] (1).
12.
Higher Production Of Algnate By A Mutant Of Azotobacter Vinelandii By Fermentation
by Saria Rahim | Ms. Shagufta Saeed | Dr. Muhammad | Ms. Huma Mujahid.
Material type: ; Format:
print
; Literary form:
not fiction
Publisher: 2012Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 1521,T] (1).
13.
Bioconversion of Agriculture Waste to Lysine with UV Mutated Strain of Brevibacterium Flavum and ItsBiological Evaluation in Broiler Chicks.
by Alia Tabassum | Ms. Faiza Masood | Dr. Asif Nadeem | Dr. Muhammad Tayyab.
Material type: ; Format:
print
Publisher: 2012Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 1530,T] (1).
14.
Bioconversion Of Industrial Wastes To 6-Aminopencillanic Acid With Escherichia Coli.
by Hasan Javed | Ms. Shagufta Saeed | Dr. Abu Saeed Hashmi | Dr. Muhammad.
Material type: ; Format:
print
Publisher: 2013Dissertation note: 6-aminopenicillanic acid is ?-lactam nucleus produced by penicillin acylaseupon hydrolysis of penicillin. 6-APA is main component of semi-synthetic penicillins. Penicillin acylase is most valuable enzyme and is produced by many microbes such as Escherichia coli. Different media and method were used for the isolation, identification an characterization of E. coli. Total 30 strains of E. coli were isolated from fecal matter of equine species and tested for the penicillin acylase activity. About 13 isolates gave the enzyme activity.
For the production of cell mass, different low cost media was used to cut down the price of production. Corn steep liquor, molasses, milk whey and wheat bran was tested for the growth of E. coli. These industrial wastes can minimize the production cost of 6-APA which has a high demand for the production of semi-synthetic penicillins. Corn steep liquor showed better growth of E. coli and can be used as the cheap source of carbon and nitrogen.Phenylacetic acid was also used in the growth medium and it was used as the inducer for enzyme. Without phenylacetic acid in medium, enzyme production decreases.
Corn steep liquor is the best sources for production of cells which is 0.520 mg mL-1 Molasses also better for fermentation and highest value is 0.336 mg mL-1. Milk whey media needs further studies for the better production of cells with using different concentrations.it gave best production 0.112 mg mL-1 Wheat bran is not proper source for cell production and does no showed E. Coli growth. All the strains showed growth in corn steep liquor, milk whey and molasses but not in wheat bran. Among all the strains horse sample (Ho-9) showed better cell production in all the media used.
Availability: Items available for loan: UVAS Library [Call number: 1571,T] (1).
15.
The Diagnostic Value Of Tta Codon Substitution In Los Angeles Galactosemia
by Sahr Malik | Dr. Muhammad Imran | Dr. Muhammad | Miss. Sehrish Firyal.
Material type: ; Format:
print
; Literary form:
not fiction
Publisher: 2012Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 1590,T] (1).
16.
Develoopment Of A Reliable Microsatellites Maarkers Panel For Parentage Analysis In Cattle Breeds Of Pakistan and Its Validatio Through Cytochrome B Gene Sequencing
by Tanveer Hussain | Prof. Dr. Masroor Ellahi Babar | Dr. Ahmad Ali | Dr. Muhammad Wasim.
Material type: ; Format:
print
Publisher: 2013Dissertation note: Pakistan posseses enormous Animal Genetic Resource (AnGR) with 36.9 millions of cattle population. The data on genetic fabric of these breed is yet to be documented for their genetic characterization and identification. This work reports first country wide microsatellite markers and cytochrome b gene based genetic characterization of 10 famous cattle breeds of Pakistan. A total of 352 blood samples from unrelated and phenotypically representative of ten native cattle breeds including Bos indicus; Sahiwal, Cholistani, Red Sindhi, Tharparker, Dhanni, Dajal, Lohai, Bhagnari, Achai and Bos indicus x Bos taurus; Nari Master, and an exotic Bos taurus; Holstein Friesian breeds were collected from their respective home tracts, institutional herds and private livestock farms located throughtout the country. These samples were subject to DNA extraction using inorganic method caliberated to same concentration in Molecular Biology and Genomics Laboratory of the Institute of Biochemistry and Biotechnology, University of Veterinary and Animal Sciences, Lahore Pakistan. A total of 21 microsatellite markers recommended by the programme for the global management of genetic resources (MoDAD) for breed characterization of Food and Agriculture Organization (FAO) of the United Nations and International Society for Animal Genetics (ISAG) were applied. Multiplex PCR were optimized for amplification and were genotyped using ABI Genetic Analyzer 3130 xl using LIZ as size standard. Genotyping results were analyzed using POPGENE and Arlequin ver 3.5 software. The observed and effective number of alleles ranged from 10 (INRA32) to 43 (TGLA126) and 2.3574 (CSSM66) to 15.0019 (BM6526) respectively in all breeds? The observed and expected heterozygosity estimates ranged from 0.0638 (INRA32) to 0.7101 (BM2113) and 0.6510 (INRA32) to 0.9347 (BM6526) respectively in the experimental samples. Mean values for observed and expected heterozygosity was 0.4943 ± 0.1647 and 0.8164 ± 0.0930 respectively. Mean values for Fis, Fit and Fst in all cattle breeds were calculated as 0.2819, 0.3864 and 0.1456 respectively. Average polymorphic information content (PIC) of all microsatellite loci was 0.81 indicating a high degree of informativeness of all microsatellite markers used. It implies that the same set of markers is equally good and could reliably be used for parentage confirmation in Pakistani cattle breeds. The data produced, also showed least degree of genetic difference between Red Sindhi and Tharparker breeds. This may due to mixing of the two breeds for being in close proximity of their home tracts.
Fragment mitochondrial cytochrome b gene was also amplified using specific primers through PCR of 130 individuals representing all selected breeds and sequencing was done using ABI Genetic Analyzer 3130 xl. The sequences were aligned and analyzed with CodonCode Alligner 4.0.4 software. The analysis revealed highly degree of sequence conservation in all the Pakistani cattle while documenting changes in only 9 nucleotides from 26 individuals whereas multiple nucleotide changes in 5 locations were shown by more than one individual in the data presented. One polymorphic site was found in nucleotide 318 (T?C) in several breeds of indicine cattle while 2 Lohani and 5 Nari Master individuals showed nucleotide changes specific to taurine cattle. Of all the changes found, only three of them caused changes in the amino acid sequence. The UPGMA tree using MEGA 5.1 showed a clear differentiation between taurine and indicine cattle, except for Nari Master Pakistani cattle showing mitochondrial taurine sequences because it's a cross between Bhagnari (Bos indicus) and Australian Draught Master (Bos taurrus). The estimates of divergence among breeds were also low for most breed pairs, except for Nari Master and Dhanni whereas the overall divergence within Bos indicus or within Bos taurus were also very low (0.002 and 0.003, respectively) but the differences between Bos indicus and Bos taurus were significantly higher (0.014) as should be the case.
These results of microsatellite markers have produced a set of information that can be recommended as a reliable marker panel for studies on genetic diversity analysis, parentage confirmation. The cytochrome b data on the other hand not only substantiated genetic diversity analyses but it also proved to be equally good for comparative Phylogenetic analysis of Pakistani cattle breeds and exotic breeds. This work provides most authenticated data and adds a great deal, to already existing information on Pakistani AnGR. This information coupled with prospective data using next generation genetic technologies will assist designing breed improvement focused breeding policies and conservation activities in future.
Availability: Items available for loan: UVAS Library [Call number: 1597,T] (1).
17.
Pcr (Polymerase Chain Reaction) Test Development And Its Application For The Diagnosis Of Congenital Leptin Deficiency
by Nida Fakhar | Dr. Muhammad Imran | Miss Faiza | Miss. Sehrish Firyal.
Material type: ; Format:
print
; Literary form:
not fiction
Publisher: 2013Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 1383,T] (1).
18.
Identification Of Pesticide Residues In Different Vegetable Collected From Market Of Lahore, Pakistan.
by Anam Munawar | Dr. Muhammad Imran | Dr. Abu Saeed Hashmi | Dr. Muhammad.
Material type: ; Format:
print
Publisher: 2013Dissertation note: Pesticides are the chemicals which are used to kill or repel the unwanted objects such as pests. Different types of pesticides are present which undergo a different mechanism and kill the pests. Four different types are being used in Pakistan such as organophosphate, organochlorine, pyrehtroid and carbamates. Use of organophosphate and organochlorine become less due the presence of residues. Use of pesticides is increased for a number of purposes such as to increase the rate of production, to decrease the damage of crops and to increase the saving time of different vegetables.
Vegetables are the main source of income of Pakistan, and vegetables are common in our use. Vegetables contain different nutritional elements of our diets. That's why vegetables play an important role in the nutritious diet of a person. The spray of different chemicals on vegetables not only decreases the nutritional elements but also increase the risk of different diseases.
As pesticides leave their residues in vegetables, different techniques can be used to detect the residues and their maximum residue limit, at which limit these pesticides are harmful for humans. Pesticides can also act on unintended individual such as human beings and cause different acute and chronic diseases.
Different vegetables were selected for analyses that are common in use and available in every season. Pesticides which were selected are that which are common in Pakistan and from different pesticide classes.
In present study vegetables of different areas of Lahore were collected and analyzed through HPTLC and GC/MS. HPTLC was used to analyze and calculate the concentration and GC/MS was used for the confirmation of results, and it was concluded that which vegetable contain the high concentration of pesticides. It was studied that which vegetable absorb large amount of pesticides. Potato, tomato, egg plant, okra and cucumber of different markets of Lahore contain high concentration of pesticides as compared to the other vegetables.
Availability: Items available for loan: UVAS Library [Call number: 1510,T] (1).
19.
Genetic Characterization Of Pakistani Lathy Pigeons Using D-Loop, Cyt B And 16S Rrna Genes As Genetic Marker
by Muhammad Umair Latif | Ms. Sehrish Firyal | Dr. Ali Raza Awan | Dr. Muhammad.
Material type: ; Format:
print
; Literary form:
not fiction
Publisher: 2013Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 1399,T] (1).
20.
Diagnostic Value Of 4Bp- 5' Gtca Deletion In Duarte Galactosemia
by Sadia Zia | Dr. Muhammad Imran | Ms. Faiza | Ms. Sehrish Firyal.
Material type: ; Format:
print
; Literary form:
drama
Publisher: 2013Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 1602,T] (1).
21.
Mutational Analysis Of Myelocytomatosis (Myc) Gene Isolated From Dog & Cat Tumours.
by Anum Kamal | Dr. Mhammad Wasim | Dr. Muhammad | Ms. Sehrish Firyal.
Material type: ; Format:
print
; Literary form:
not fiction
Publisher: 2013Dissertation note: Now a day's pets, dogs & cats form an important part of society and their health care have gain much popularity among owners. The hazardous radiations, along with other ailments cause different cancers in them which are the most fatal diseases. This increase in cancer prevalence is also related to animals living to increasingly older ages due to better nutrition, vaccination and health care provided to them. In order to provide proper treatment and care to these animal cancer patients, it is important to gather knowledge about the genes involve in causing them. There are many genes which regulate the cell cycle progression, cell proliferation and cell differentiation. Here in this study we have tried to understand this dreadful disease at molecular level. And hoping the knowledge gain through this would help in providing better treatment in future, not only to pets but also to humans. Dogs and humans share anatomical and physiological similarities, and a large number of cancers are diagnosed and managed to some extent in dogs annually. More importantly the basic biology of cancer in dogs is analogous to human cancers. According to an estimate every fourth dog suffers with cancer.
The deregulation and mutations in proto-oncogenes are the subjects under study. One such proto-oncogene is Myc, whose translated protein act as a transcription factor and regulates the expression of various genes. Myc protein binds DNA at specific sites, i-e e-box sequence and initiates the transcription of other genes, and controls their expression. Myc is assumed to regulate 15% of all cellular genes. Elevated expression of Myc is spotted in about 70% of all cancers.
The sampling was done from pet dogs and cats, belonging to different breeds with diagnosed tumor type, from the pet centre of university of veterinary and animal sciences, Lahore and various private pet clinics. 3-5 ml blood was collected aseptically and genomic DNA was extracted from blood using inorganic extraction method & its quantity was checked by NanoDrop spectophotometer. Four primer sets were designed to amplify protein coding region of Myc gene. After amplification through PCR, DNA sequencing was done. Data interpretation was done by using several softwares like BLAST alignment tool, Chromas Lite, Mega 5.2, Phyre 2, VMD 1.9.1, & PyMOL. A polymorphic change was detected in the protein coding region of Myc gene, which causes an amino acid substitution at lys355 by Arg, thus changing the Myc protein sequence. But this change might not affect protein structure much, as in some bHLH proteins Arg355 resides normally. Some changes in the 3'UTR were also detected which might play crucial part in stabilizing the Myc protein, by altering silencer box or miRNA binding sites. Thus high level of stable Myc protein causes increase cell division leading to tumor production.
This study will make available the genetic data and contribute substantial addition in the existing information in animal genetic resources. It would also aid in future to assess the possibility whether Myc can serve as a useful marker for diagnosis and prognosis of these malignancies. The need for today is to develop valid biomarkers, which can be incorporated in ongoing in vivo and in vitro clinical mechanistic and improve the diagnosis & prognosis of this dreadful disease.
Availability: Items available for loan: UVAS Library [Call number: 1604,T] (1).
22.
Designing The Small Interference Rna Against Expression Of Coat Protein (Cp) Gene Of Potato Virus X (Pvx)
by Shafique Ahmed | Prof. Dr. Tahir Yaqub | Dr. Muhammad Wasim | Ms. Faiza.
Material type: ; Format:
print
; Literary form:
drama
Publisher: 2013Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 1605,T] (1).
23.
Biochemical Identification Of Various Causes Of Anemia In Females From District Pakpattan
by Hafiz. Muhammad Toqeer | Dr. Muhammad Tayyab | Dr. Abu Saeed Hashmi | Mr. Muhammad.
Material type: ; Format:
print
Publisher: 2013Dissertation note: Anemia is estimated to be affecting almost 600 millions people all over the globe and is regarded as deficiency in Hemoglobin concentration. The decreased amount of hemoglobin in blood could not been able to fulfill the oxygen demand of tissues in body. Keeping in view the above situation, a study was planned to investigate the various types of anemia in dist. Pakpattan.
One hundred blood samples were collected from females randomly selected from various parts of district Pakpattan. The samples were divided into two groups on the basis of age. Group A contains the patients with age between 14 to 26 years where as Group B consist of patients with age 27 to 40 years. Samples were processed in-order to estimate Complete Blood Count, serum iron level, serum ferritin levels, vitamin B12 assay and HPLC based estimation of various variants of hemoglobin.
The results demonstrated that 62% of the total female population of dist. Pakpattan was found to be anemic. Among Group A, 66.66% were anemic due to iron deficiency and 33.33% were due to chronic disease. Group B contained 59.09% anemic, out of these patients, 57.69% were anemic due to iron deficiency, 38.46% due to chronic disease and 2.27% due to deficiency of Vitamin B12. Iron deficiency was found to be the major cause of anemia that is followed by anemia due to chronic disease and Vitamin B12 deficiency. The intensity of anemia was 5% higher in young age females (Group A) as compared to the elder age females (Group B).
This work provided the information about the prevalence of various types of anemia in the population of dist. Pakpattan. The data will be helpful for developing strategy for the control of anemia in future. Further study with a large number of samples, is required throughout the country for the establishment of a data base that will be a good step to control various types of anemia.
Availability: Items available for loan: UVAS Library [Call number: 1611,T] (1).
24.
An Insight Into Mutational Analysis Of B-Cell Lymphoma-2 (Bcl-2) Gene And Its Involvement In Pets Cancer
by Asma Irshad | Dr. Muhammad Wasim | Mr. Akhtar Ali | Ms. Shagufta Saeed.
Material type: ; Format:
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Publisher: 2013Dissertation note: There are various type of tumors associated with dog (Canis familiaris) and cat (Feline catus) which are responsible for death of these pets. Bcl-2 proto-oncogene was firstly depicted as of the t(14;18) trans-location cut-off point inside human follicular B-cell lymphoma. The Bcl-2 protein is a core control device of planed cell death as well as is concerned within DNA transformation, cell-cycle and differentiation control. Bcl-2 expression within endothelial cells was described en route for enhance cancer metastasis. Mammary gland tumors are the mainly frequent neo-plasms happening into feminine dogs and cats and are malevolent inside more or less 50% of the cases. Bcl-2 expression is not merely interrelated through an enhanced expression but as well by means of an abridged aptitude on behalf of far-away immigration of mammary gland cancer cells. Metastasis to tissues like skin, nasal passage and oral cavity has also been reported in 5-6.9 percent of cases.
Various parameters, used in the present study were aimed to analyze coding regions of Bcl-2gene to study the mutations involved in cancers. Blood samples of unrelated true representative of cancers were collected from Pet center, University of Veterinary and Animal Sciences, Lahore. DNA was extracted with the standard protocol and amplification of the Bcl-2 gene was done with specially designed primers.
Later on, analysis of the results was done by sequencing of amplicons. Sequences were analyzed through BioEdit software and then aligned with reference sequence using clustalW2 software.
In the present study, analysis of mutations was done in Bcl-2gene isolated from Canis familiaris and Feline catus. But not a single nucleotide polymorphism was found in exon 1 and 2 of Bcl-2 gene isolated from blood of affected animals with different cancer types.
In the conclusion, we report that no mutations were observed in the Bcl-2 gene isolated from different affected pets. It may be due to limited number of samples and/or require extraction of DNA from tumor tissue. There is a need to explore the other gene mutations causing cancers in population of pets that will ultimately help to develop genetic counseling strategies, gene therapies and prenatal diagnostic procedures for the population of Pets.
Availability: Items available for loan: UVAS Library [Call number: 1612,T] (1).
25.
Molecular Epidemiology Of Subclinical Tuberculosis In Peri-Urban Human Population Of Lahore.
by Sadeem Shahzad | Dr. Muhammad Yasir Zahoor | Dr. Muhammad | Prof. Dr. Tahir Yaqub.
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drama
Publisher: 2013Dissertation note: Tuberculosis (TB) is known to be a major health problem worldwide causing disease among millions of people every year. Major cause of tuberculosis in human is the infection with M.tuberculosiswhich usually causes pulmonary or lungs TB but an unknown number of patients are also infected with M.bovis which causes tuberculosis in humans as zoonotic agent along with its major hosts like cattle and deer. In developing countries where raw milk is used without pasteurisation there is a heavy risk of tuberculosis infection with M.bovis. TB infection with M.bovis mainly appears as extra pulmonary tuberculosis with and without specific symptoms of the disease.Diagnosis of subclinical asymptomatic tuberculosis and that of extra pulmonary tuberculosis is a difficult task and most of the time disease remains undiagnosed or misdiagnosed due to the unavailability of specific and sensitive diagnostic tool to diagnose the disease at early stage. Moreover prevalence of M.bovisinfection is not properly known.
This study was designed to measure the diagnostic value of Interferon gamma release assay (IGRA) for early and reliable diagnosis of subclinical extra pulmonary TB along with the molecular epidemiology of subclinical extra pulmonary TB to check the prevalence of M.bovisinfection. IGRA is a latest blood test with high specificity and sensitivity based on the principle of Interferon gamma released by effector T-Cell when exposed to M.tuberculosis antigens like ESAT-6 and CFP-10 in controlled in-vitro conditions. Eighty patients were selected for the study on the bases of the history of having day to day cattle contact along with feelings of sickness. Biopsy tissue samples of all the patients which were positive with IGRA were requested, however 24 out of 27 positive samples were collected and were first examined histologically. Twenty seven samples out of eighty were found positive with IGRA while 22 out of 24 samples were confirmed by histological examination as infected with MTB.
Both IGRA and histological examination are unable todifferentiate between the specie specific infection with M.tuberculosis orM.bovis for which differential amplification of specific fragments of bothof the species was done by running a multiplex PCR using M.tuberculosis specific 185 bp pncA product and M.bovis specific 500 bp segment. Genomic DNA was extracted from previously formalin fixed paraffin embedded (FFPE) tissues which requires pretreatment for deparaffinization. Xylene was used as deparaffinization agent. All of the twenty two samples positive with IGRA and histological study were found positive for M.tuberculosis infection and none of the sample was found positive for M.bovis infection. Results showeda close correlation among all three techniques with their specific benefits and limitations.
Study concluded that T.Spot TB (IGRA) is a potentially reliable test for the diagnosis of subclinical, extrapulmonary TB.Formalin Fixed Paraffin Embedded (FFPE) tissues may be used for TB diagnosis and other DNA based researches. Duplex PCR is a reliable technique for differential diagnosis of infection with different species of MTB complex, though none of the sample was found positive for M.boviswhich is may be due to small sample size of the study and it may further be studied in future researches. The research findings will help the clinicians to depend on IGRA testing for timely and reliable diagnosis of extrapulmonary subclinical tuberculosis and potential use of FFPE tissue samples as appropriate specimen for molecular based diagnosis of TB. Further studies are however, required to check the prevalence of M.bovis infection byincreasing sample size.
Availability: Items available for loan: UVAS Library [Call number: 1621,T] (1).
26.
Leptin Mutations In Morbidly Obese And Severely Lean Individuals From Pakistan
by Muhammad Wasim | Dr. Sehrish Firyal | Dr. Muhammad | Dr. Muhammad Imran.
Material type: ; Format:
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drama
Publisher: 2013Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 1623,T] (1).
27.
The Study Of Retinoblastoma (Rb) Gene Mutations Involved In Different Types Of Cancers In Dogs And Cats.
by Siddra Pervaiz | Dr. Muhammad Wasim | Dr. Muhammad | Dr. Muhammad Yasir Zahoor.
Material type: ; Format:
print
; Literary form:
not fiction
Publisher: 2013Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 1632,T] (1).
28.
Analysis Of Medulla In Human Head Halr In Different Castes
by Summaiya Aurangzeb | Dr. Wasim Shehzad | Dr. Muhammad | Dr. Muhammad Tayyab.
Material type: ; Format:
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; Literary form:
not fiction
Publisher: 2013Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 1633,T] (1).
29.
Isolation, Purification And Characterization Of Xylanase From Aspergillus Flavus (Wild Stin) Using Agriculture Waste as Substrate
by Hadia Rehman | Ms. Asma Waris | Dr. Abu Saeed Hashmi | Dr. Muhammad.
Material type: ; Format:
print
; Literary form:
drama
Publisher: 2013Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 1634,T] (1).
30.
Evaluation Of The Detoxification Potential Of Lactic Acid Bacteria From Curd And Whey Against Ochratoxin A In Broiler
by Afshan shabbir | Ms Huma Mujahid | Dr. Asif Nadeem | Dr. Muhammad Tayyab.
Material type: ; Format:
print
; Literary form:
drama
Publisher: 2013Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 1657,T] (1).
31.
Identification Of Polymorphism In Bone Morphogentic Protein Receptor Type-1B (Bmpr-1B) In Teddy Goats
by Sonia Noreen Anjum | Dr. Muhammad Imran | Dr. Abu Saeed | Ms. Sehrish Firyal.
Material type: ; Format:
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not fiction
Publisher: 2013Dissertation note: Teddy goats provide a great scope for enhancing meat and milk production being the primary objective to compensate for increased demand in Pakistan. It is an established fact that an animal producing twins or triplet contributes more than 1.5 times toward meat than the animals producing single offspring per kidding. Hence, the identification of major fecundity genes, mutations of which are thought to elevate ovulation rate and litter size in goats as well as sheep breeds, has been the center of attention for all scientists. Four major fecundity genes expressed in goat ovary namely: GDF-9, BMP-15, ESR-? and BMPR-1B are the causative genes for high prolificacy.
Bone morphogenetic protein receptor type-1B (BMPR-1B) gene first identified ingranulosa cells of ovary. A-G transition at 746 bp at the FecB gene locus causing an amino acid substitution namely Q249R increases the antral follicular maturation leading to the release of a large number of ovules hence increasing litter size in range from 1.4-2.7 kids/birth.
In this study, blood samples from 52 Teddy goats were collected having twining record and processed for DNA extraction. DNA fragments containing FecB gene were PCR-amplified from extracted DNA samples. The PCR amplicons containing Q249R substitution were subjected to RFLP so that the presence or absence of these polymorphisms could be analyzed.
On analysis with DdeI restriction enzyme, three types of allelic fragments namely: wild type, homozygous mutant and heterozygous mutant of FecB gene mutation in Pakistani Teddy goats were to be observed. Whereas,the results obtained for this study strongly suggests that the Q249R mutation of FecB marker in BMPR-1B gene was not present in Teddy goats and these goats were found to be non-carriers for this mutation having wild type alleles. However, this work did not claimed the absence of any other mutation in BMPR-1B. There may be the involvement of other fecundity genescausing the increased prolificacy of these goats causing twining and triplets namely: Growth differentation factor-9 (GDF-9) and bone morphogenetic protein-15 (BMP-15).
Availability: Items available for loan: UVAS Library [Call number: 1670,T] (1).
32.
Biochemical & Molecular Characterization Of Locally Isolated Extremophile
by Iram Murtaza | Dr. Muhammad Tayyab | Ms. Sehrish | Ms. Shagufta Saeed.
Material type: ; Format:
print
Publisher: 2013Dissertation note: Extremophiles are microorganisms with the ability to survive under extreme of conditions. Due to their extreme stability, these microorganisms produce unique biocatalysts that have been exploited in various industrial processes. These micro-organisms are unique factories for the production of enzymes that have great potential for agriculture, textile, pharmaceutical, poultry and detergent industries.
The present study was conducted for the isolation and characterization of alkaliphile. The sampling was done from spring located in Rawat, Pakistan. Optimization of growth conditions was done by growing the microorganism at various conditions including temperature, pH and salt concentration. The microorganism was identified on the basis of biochemical characteristics as well as on the basis of 16S rRNA gene sequence. Regarding the molecular characterization, the genomic DNA was isolated from the strain and was utilized for the amplification of 16S rRNA gene. The PCR product was ligated in pTZ57R/T. The ligation mixture was utilized for the transformation of E.coli DH5-? cells. The presence of insert in recombinant pTZ57R/T was confirmed by single and double restriction with EcoR1 and Hind III which resulted in the liberation of DNA fragment. The gene sequence was utilized for the phylogenetic analysis. The microorganism was found to be Gram positive rods involved in the production of catalase, amylase, protease, enzymes and gave positive results for Mannitol, Voges Proskauer Tests while negative for citrate utilization and nitrate reduction test. 16S rRNA gene sequence analysis demonstrated that the newly isolated strain showed maximum homology with various members of genus Exiguobacterium. The newly isolated strain was declared a new member of genus Exiguobacterium and was named as Exiguobacterium UVAS-01.
Availability: Items available for loan: UVAS Library [Call number: 1706,T] (1).
33.
Molecular Identification Of Bacterial Infections In Human Spontaneous Abortions
by Zarish Noreen | Dr. Muhammad Tayyab | Mr. Akhar Ali | Ms. Faiza Masood.
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drama
Publisher: 2013Dissertation note: A miscarriage medically known as spontaneous abortion is defined as a pregnancy that ends by itself spontaneously before the fetus has reached a viable gestational age of 20 to 24 weeks. Brucellosis, Q fever and Chlamydiosis are the zoonotic diseases that are widely distributed around the world and are caused by gram negative Brucella melitensis, Brucella abortus, Coxiella burnetii, Chlamydophila pecorum and Chlamydophila abortus. The current study was carried out for the molecular detection of five zoonotic bacteria in spontaneous human abortion cases. The complete blood analysis is helpful for the early diagnosis of infections in pregnancy. In this study complete blood count (CBC) and liver function test (LFT) of all patients was carried out and it was found that hemoglobin, total leukocyte count (TLC), serum bilirubin, serum alkaline phosphate, serum aspartate aminotransferase (AST), serum alanine aminotransferase (ALT) values were found to be increased as compared to normal values which indicated the fact that these parameters may fluctuate in human abortion cases.
Similarly in the present study DNA was isolated from blood samples by adopting the procedure of Genex kit. Five sets of primers were used as described earlier for identification of bacteria (Berri et al. 2009; Bally et al. 1992). In our local population of pregnant women the risk of different bacteria was evaluated and multiplex polymerase chain reaction (m-PCR) results were analyzed to determine the presence of different bacterial pathogens in all patients. The percentage prevalence of each bacterial pathogen was calculated. The prevalence of B. abortus was found to be maximum (11.6%) while B. melitensis was not detected in any patient. However, C. burnetii and C. pecorum was found to be 3.33% each and C. abortus was found to be 6.66% respectively. In healthy females no infection was observed. Quantitative data in this study was statistically analyzed using Statistical Package for Social Sciences (SPSS version 17.0). The m-PCR assay developed in current study provides a new tool for Brucellosis, Chlamydiosis and Q fever diagnosis. The application of this assay may be helpful to control animal and human infections. The study will result in the development of a diagnosis test that can be utilized for the identification of bacterial infections at early stage of pregnancy and will be helpful to reduce the number of abortions by treatment of specific bacterial infections.
Availability: Items available for loan: UVAS Library [Call number: 1712,T] (1).
34.
Molecular Characterization Of Antimicrobial Resistance Genes In Salmonella Isolates From Poultry
by Saba Zeb Khan | Prof. Dr. Tahir Yaqub | Dr. Muhammad | Ms. Sehrish Firyal.
Material type: ; Format:
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not fiction
Publisher: 2013Dissertation note: Salmonella is a gram negative bacteria which can cause a number of different diseases including gastroenteritis, bacteremia, and typhoid fever, with the most common being gastroenteritis, some serotypes of it are pathogenic and cause serious food poisoning in humans and major economic losses in both chicken and turkeys. The birds can be the reservoir of Salmonella species which cause food borne infections in human. Human get such infections by ingesting contaminated products. In poultry farms, Salmonella can be introduced by means of contaminated feeds, particularly those that contain animal raw materials.
Use of antibiotics in poultry has become a popular practice. Different antibiotics like tetracycline, streptomycin, trimethoprim etc. are given in poultry via water and feed for growth and protection against diseases. Extensive and uncontrolled use of antibiotics resulted in increased development of antibiotic resistant bacteria. Statistical data shows that Salmonella is resistant to many antibiotics especially tetracycline.
The goal of our study was Molecular characterization of tetracycline resistance genes in Salmonella spp. and to check the prevalence of tetracycline resistance genes in Salmonella isolates from poultry drinking water.
Total 50 water samples were collected from different poultry farms and poultry meat shops in Lahore district.Various biochemical tests were performed to confirm the isolated strains as Salmonella. Tetracycline resistance was examined against isolates. Plasmid DNA was extracted from these bacteria. Antibiotic resistant plasmid genes were amplified by PCR. After gel electrophoresis the resulting fragments were sequenced through genetic analyzer. After sequencing the sequence thus obtained was compared with the reported sequences of tet genes in Salmonella strains in NCBI.
It was found out that Salmonella isolates from the poultry drinking water are highly resistant to tetracycline, as 83% of the isolated Salmonella from poultry drinking water showed their resistance towards tetracycline.PCR amplification of tet genes indicated the presence of tetA gene in 100% of tetracycline resistant Salmonella, whereas 64% of the samples contained tetB gene. TetB gene was present only in combination with tetA gene. None of the sample contained tetC, tetD and tetGgene.
This study helped to find out the prevalence of antibiotic resistant genes in Salmonella isolated from poultry drinking water, which were potential threats to human being and this study will also help us in future to develop strategies to restrict the emergence of antibiotic resistant genes and their spread.
Availability: Items available for loan: UVAS Library [Call number: 1714,T] (1).
35.
Nutritional Evaluation Of Jatropha Curcas Seed Meal Toxicity With Of Without Heat And Chemical Treatments
by Nadia Nawaz | Ms. Faiza Masood | Dr. Muhammad | Dr. Muhammad Tayyab.
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drama
Publisher: 2013Dissertation note: Materials and Methods: Defatted meal was mixed with Sodium hydroxide (NaOH) and methanol. 2nd sample was mixed with Sodium hydroxide NaOH and heat 3rd defatted sample was mixed with NaHCO3 solution to form a paste cover with aluminum foil and place in autoclave at 121°C for 30 minutes .The autoclave sample was dried at 250°C for 5 hours in an oven and prepared for the determination of Antinutritional factors and tried to check the best detoxification procedure and nutritional quality of Jatropha curcas seed meal. After that prepare feed and take a trail on rats, done gross pathology and biochemical analysis of blood.
Statistical analysis: Quantitative data obtained was analyzed using one way analysis of variance technique (ANOVA) under complete randomize design mean were compared using Duncan's new multiple range tests ( DMS) the statistical significance define as P ?0.05 (Nabil et al. 2011). Costat-2003, Co-Hort, version 6.303 software was used for analysis purpose.
Output: Treatment with NaOH and heat to the Jatropha meal was the best achieve method for detoxification of that seed which enhance its nutritional value.
Availability: Items available for loan: UVAS Library [Call number: 1715,T] (1).
36.
Genetic Characterization Of Livestock Species Of Pakistan Through Dna Barcoding
by Madiha Booter | Dr.Ali Raza Awan | Dr. Abu saeed | Dr. Muhammad Imran.
Material type: ; Format:
print
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not fiction
Publisher: 2013Dissertation note: The interaction of livestock with ecosystem plays a vital role in sustainability of life. The demand of livestock products is rising day by day which is changing the relationship between livestock and natural resources. Livestock animals are playing a major role towards domestication and also contributing to fulfill human needs through meat and milk production for food industry, which generate big revenues. Pakistan is blessed with the world's best livestock species and there is a need to establish a well characterized system for the classification and identification of these important livestock species.
Mitochondrial DNA is of small size, constitutes a small fraction of the total of cell's genome and due to high rate of mutation, it is considered to be an ideal model to study evolutionary relationships. DNA barcoding is being used to characterize animals by using a standard region of mitochondrial DNA as a molecular marker. The study is designed to develop the DNA barcode for genetic characterization of livestock species of Pakistan which includes sheep, goat, cow, buffalo and camel.
Blood samples were collected from the selected livestock species. Primers were designed using primer designing free-ware software. The amplified PCR products weresequenced in both orientations by chain termination method. For data analysis,Chromas was used to read sequencing results. To study variation in all sequenced data, alignment tools were used from NCBI. Theblastnalignment tool available at NCBI is more reliable to give authentic results.The alignment results showed 100% homology with the reference sequences (No SNP or mutation was identified). The results can further be validated with the help of mass level sampling to rationalize the study at population level.Phylogenetic analysis indicated that COIDNA barcode region can be used to discriminate unknown samples of any of the species under consideration. The COIgene successfully cladded already reported sequences of the same species.
This study provided genetic data which help in species identification, to assess evolutionary pattern and genetic diversity. So, it will also be helpful to monitor legal or illegal trade of livestock species and to identify processed and unprocessed meat for quality assurance. Establishment of an elaborated DNA barcode system for livestock species will help to start taxonomic investigation and will lead towards to identify many new mammalian species of Pakistan.
Availability: Items available for loan: UVAS Library [Call number: 1752,T] (1).
37.
Genetic Effect Of Leptin Gene Polymorphisms On Silent Estrus Behavior In The Nili-Ravi Buffalo
by Fatima Muccee | Ms. Maryam Javed | Dr. Muhammad Tayyab | Mr. Akhtar Ali.
Material type: ; Format:
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drama
Publisher: 2013Dissertation note: Buffalo is a high producing animal. But to exploit its full production potential is limited due to silent heat. Silent heat leads to improper diagnosis of estrus at the time of artificial insemination that causes low fertility in buffalo. Estrus is a quantitative polygenic trait controlled by environmental factors as well as polygenes. Among all the genes controlling estrus Leptin is the potential candidate gene for estrus trait and is positioned on chromosome 4q32. It stimulates production of GnRH and with FSH it controls production of estrogen thus affecting estrus behavior. The aim of the current study was to identify the single nucleotide polymorphisms in 5 flanking sequence of exon 1 and coding region of Leptin gene and to find their association with silent estrus trait. One hundred blood samples of Nili-Ravi breed were collected from UVAS Pattoki Campus, Research Farm B and Buffalo Research Institute (BRI) Pattoki. Inorganic method was used for DNA extraction and products were precipitated and sequenced for analysis. For the analysis of sequence and to identify the polymorphism bioinformatics software FinchTV software and Bioedit software were used. The 5 flanking sequence and total 3coding regions of Leptin gene were amplified with specially designed primers. The 15polymorphic sites were observed of which one SNP was found in intron 1,9 SNPs in exon 2, 4 SNPs in intron 3 and 1 SNP in exon 3 of Leptin gene. A Bioinformatics analysis was performed with the help of "POPGENE 32" software to find the association of identified polymorphisms with silent estrus. Four SNPs were found to have significant association with silent estrus with P<0.05. SNPs were analyzed for their effect and five SNPs in exon 2 were found to be synonymous, they changed the sequence of amino acids in the Leptin protein. Population genetic analysis and allelic distribution at all loci was analysed. Out of total fifteen polymorphisms, six haplotypes were constructed on the basis of DNA sequencing of individual samples. Statistical analysis of these haplotypes was done by using SHEsis software. SignalP software was used to predict the signal peptide of the Leptin protein. Phylogenetic analysis was performed and Parsimony trees were constructed by using Mega4 Software which showed sharing of cluster by Nili-Ravi buffalo breed and cattle. This genetic characterization of Leptin gene may serve as a powerful genetic source for the development of DNA markers that can be used in association studies and for selection of animals with good heat signs.
Availability: Items available for loan: UVAS Library [Call number: 1785,T] (1).
38.
Development Of The Test For The Diagnosis Of Classical Galactosemia In General Papulation
by Mehmmona Iqbal | Dr Muhammad Imran | Ms Faiza | Ms Sehrish Firyal | IBBT.
Material type: ; Format:
print
Publisher: 2014Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 1856,T] (1).
39.
Molecular Chracterization Of Pakistani Gaucher Disease Type 2 Patients From Lahore
by Maliha Afreen | Dr Muhammad Imran | Ms Asma Waris | Ms Sayeda Kalsoom | IBBT.
Material type: ; Format:
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; Literary form:
drama
Publisher: 2014Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 1857,T] (1).
40.
Isolation ,Identification And Characterization Of Phytase Producing Bacteria
by Hafsa Raiaz | Dr Muhammad Tayyab | Miss Asma Waris | Miss Saeeda | IBBT.
Material type: ; Format:
print
; Literary form:
not fiction
Publisher: 2012Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 1865,T] (1).
41.
Molecular Characterization Of Cldn 14 Gene Encoding A Cell Tight Junction Protein In Mouse
by Ihsan Ullah | Dr. Muhammad Yasir zahoor | Dr. Wasim Shehzad | Ms. Shagufta.
Material type: ; Format:
print
Publisher: 2014Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 1906,T] (1).
42.
Optimization Of Nested-Pcr For Diagnosis Of Toxoplasma Gondii In Lahore Area
by Amna Arshad bajwa | Dr. Wasim Shehzad | Dr. Muhammad | Dr. Tanveer hussain.
Material type: ; Format:
print
Publisher: 2014Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 1916,T] (1).
43.
Molecular Diversity Of Fumaryl Acetoacetate Hydrolase Gene In Mammalian Species
by Sadaqat ijaz | Dr. Muhammad yasir zahoor | DR. Muhammad Imran.
Material type: ; Format:
print
Publisher: 2014Dissertation note: The present study has been planned to study the pathogenicity of FAdv-4 by inoculation of different age groups of broiler birds through different parenteral routes and oronasal routes. The liver homogenate suspension prepared from infected liver samples and cell culture propagated infectious agents were used to infect the susceptible broiler birds via parenteral routes and through oronasal routes. For this purpose two experiments were designed as Experiment I and II. In Experiment I the 25-day-old broiler birds were inoculated with different dilutions of liver homogenate and cell culture propagated HPS virus through intramuscular (i/m) and oral routes. Similarly in Experiment II the one-day-old, 1-week-old, 2-week-old, 3-week-old and 4-week-old broiler chickens were inoculated with the original dilution (100) of same liver homogenate and cell culture propagated HPS virus through S/C and oral route. The birds were kept under observation for recording morbidity and mortality. In Experiment I the liver homogenate caused 64% mortality in broiler birds of the Group A through intramuscular route, while 33.33% mortality in broiler birds of Group B through oral route. The cell culture propagated HPS virus caused 60% and 13.33% mortality in broiler birds of Group C and D through intramuscular and oral routes, respectively. In Experiment II none of the day-old-chick died from Group A inoculated with liver homogenate and cell culture propagated HPS virus through s/c and oral route. The liver homogenate and cell culture propagated HPS virus caused high mortality in different age groups of broiler birds through s/c route than oral route. The blood samples were collected from the broiler birds before and after infection and various hematological parameters such as Hemoglobin and packed cell volumes were studied. The values of hemoglobin and packed cell volume showed highly significant (P<0.05) reduction indicating anaemia. The values of hemoglobin and packed cell volume of the broiler birds inoculated with infectious liver homogenate showed highly significant reduction than the birds inoculated with cell culture propagated HPS virus. The results indicated that the liver homogenate is more pathogenic than cell culture propagated HPS virus. There changes may be due to adoptability of the original FAdVs after continued passages in the culture of chicken embryo liver cells.
Availability: Items available for loan: UVAS Library [Call number: 0946,T] (1).
44.
Molecular Investigation Of K99 Enterotoxigenic Escherichia Coli
by Nida Javaid | Prof. Dr.Tahir yaqub | Dr. Muhammad wasim | DR.Abu Saeed.
Material type: ; Format:
print
; Literary form:
not fiction
Publisher: 2014Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 1967,T] (1).
45.
Genetic Characterization Of Pakistani Flayer Pigeons Using Mitochondrtial Nd2. And 16S Rrna Genes As Genetic
by Ahmad Ali | Dr. Sehish firyal | DR. Muhammad imran.
Material type: ; Format:
print
; Literary form:
not fiction
Publisher: 2014Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 1970,T] (1).
46.
Molecular Phylogeny And Diversity Analysis Of Gazella Bennettii (Chinkara) Deer Of Pakistan Using D- Loop Region Of Mitochondrial DNA
by Maleekah zaheer | Dr. Muhammad yasir zahoor | DR. Ali raza awan | Miss. Faiza.
Material type: ; Format:
print
; Literary form:
not fiction
Publisher: 2014Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 1985,T] (1).
47.
Analysis Of Epidermal Growth Factor Receptor Gene Polymorphism Implicated In Tumors Including Oralsquamous Cell
by Noveen nawaz | Dr. Muhammad Wasim | Dr. Muhammad | Dr. Muhammad Yasir zahoor.
Material type: ; Format:
print
Publisher: 2014Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 1998,T] (1).
48.
Effect Of Medicinal Plant Extracts On Genes Expression In Human Cervical Carcinoma
by Atika saeed | Dr. Muhammad Tayyab | DR | Ms. Huma mujahid.
Material type: ; Format:
print
; Literary form:
not fiction
Publisher: 2014Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 1999,T] (1).
49.
Molecular Analysis Of Mitochondrial Hypervariable Region In Three Consecutive Generations Of Buffalo
by Zara zaheer | Dr. Muhammad Yasir zahoor | Dr. MUhammad Imran | MR. Tariq.
Material type: ; Format:
print
; Literary form:
not fiction
Publisher: 2014Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 2003,T] (1).
50.
In- Silico Functional Prediction Of Prion Protein Polymorphisms In Bovine Spongiform Encephalopathy
by Sana jafar | DR. Nuhammad imran | Dr. Muhammad yasir zahoor | Ms. Faiza.
Material type: ; Format:
print
Publisher: 2014Dissertation note: Abstract Availability: Items available for loan: UVAS Library [Call number: 2011,T] (1).
